Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs9455637 chr6:168121713 G/A 3.1E-8 482 31.27 28.07 35.58 KM Plot
PRAD rs9455985 chr6:168104001 G/A 5.67E-8 488 31.4 25.87 21.97 KM Plot
PRAD rs9456004 chr6:168106429 C/T 5.67E-8 488 31.4 25.87 21.97 KM Plot
PRAD rs9461011 chr6:24440351 C/T 0.000142 494 26.03 34.93 29.23 KM Plot
PRAD rs9505808 chr6:168107586 T/C 4.2E-10 487 31.65 25.67 21.97 KM Plot
PRAD rs954808 chr9:72963345 C/T 1.75E-5 492 30.8 31.4 22.45 KM Plot
PRAD rs9549367 chr13:113911532 C/G 2.17E-5 488 32.03 30.97 27.43 KM Plot
PRAD rs9550533 chr13:20190521 A/G 2.99E-5 482 30.8 31.72 22.67 KM Plot
PRAD rs9551789 chr13:20171808 A/G 3.09E-5 485 30.8 31.27 22.67 KM Plot
PRAD rs9551814 chr13:20182270 G/A 2.74E-5 487 30.8 31.3 22.67 KM Plot
PRAD rs9552034 chr13:20451410 A/G 0.00015 494 30.75 31.33 31.5 KM Plot
PRAD rs9578596 chr13:24002382 G/T 2.21E-6 494 31.25 30.73 23.07 KM Plot
PRAD rs9578597 chr13:24007495 A/G 4.07E-8 487 31 30.75 23.67 KM Plot
PRAD rs9580619 chr13:23994471 G/C 6.43E-7 480 30.93 30.77 23.67 KM Plot
PRAD rs9580621 chr13:24004028 A/G 3.96E-8 489 31 30.18 23.67 KM Plot